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1

Radius of gyration as an indicator of protein structure compactness

M. Yu. Lobanov, N. S. Bogatyreva, O. V. Galzitskaya

Journal:

Molecular Biology

Year:

2008

Language:

english

File:

PDF, 224 KB

english, 2008

2

Stability and rigidity/flexibility—Two sides of the same coin?

Mamonova, Tatyana B., Glyakina, Anna V., Galzitskaya, Oxana V., Kurnikova, Maria G.

Journal:

Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

Year:

2013

Language:

english

File:

PDF, 2.58 MB

english, 2013

3

Experimental and theoretical studies of mechanical unfolding of different proteins

Glyakina, A. V., Balabaev, N. K., Galzitskaya, O. V.

Journal:

Biochemistry (Moscow)

Year:

2013

Language:

english

File:

PDF, 452 KB

english, 2013

4

Amyloid-like properties of Saccharomyces cerevisiae cell wall glucantransferase Bgl2p

Kalebina, Tatyana S., Plotnikova, Tatyana A., Gorkovskii, Anton A., Selyakh, Irina O., Galzitskaya, Oxana V., Bezsonov, Evgeniy E., Gellissen, Gerd, Kulaev, Igor S.

Journal:

Year:

2008

Language:

english

File:

PDF, 641 KB

english, 2008

5

Estimation of Protein Folding Rate from Monte Carlo Simulations and Entropy Capacity

V. Galzitskaya, Oxana

Journal:

Current Protein & Peptide Science

Year:

2010

Language:

english

File:

PDF, 619 KB

english, 2010

6

Analysis of Insulin Analogs and the Strategy of Their Further Development

Selivanova, O. M., Grishin, S. Yu., Glyakina, A. V., Sadgyan, A. S., Ushakova, N. I., Galzitskaya, O. V.

Journal:

Biochemistry (Moscow)

Year:

2018

Language:

english

File:

PDF, 2.14 MB

english, 2018

7

Anomalous Kinetics of Amyloidogenesis Suggest a Competition between Oligomers and Fibrils

Finkelstein, A. V., Dovidchenko, N. V., Galzitskaya, O. V.

Journal:

Molecular Biology

Year:

2018

Language:

english

File:

PDF, 470 KB

english, 2018

8

Comparative Analysis of Aggregation of Thermus thermophilus Ribosomal Protein bS1 and Its Stable Fragment

Grishin, S. Yu., Dzhus, U. F., Selivanova, O. M., Balobanov, V. A., Surin, A. K., Galzitskaya, O. V.

Journal:

Biochemistry (Moscow)

Year:

2020

Language:

english

File:

PDF, 1.90 MB

english, 2020

9

Insulin and Lispro Insulin: What is Common and Different in their Behavior?

Selivanova, Olga, Suvorina, Mariya, Surin, Alexey, Dovidchenko, Nikita, Galzitskaya, Oxana

Journal:

Current Protein & Peptide Science

Year:

2016

Language:

english

File:

PDF, 2.47 MB

english, 2016

10

Roughness of the globular protein surface: Analysis of high resolution X-ray data

Alexander A. Timchenko, Oxana V. Galzitskaya, Igor N. Serdyuk

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1997

Language:

english

File:

PDF, 205 KB

english, 1997

11

Backbone Carbonyl Group Basicities Are Related to Gas-Phase Fragmentation of Peptides and Protein Folding

Mikhail M. Savitski, Frank Kjeldsen, Michael L. Nielsen, Sergiy O. Garbuzynskiy, Oxana V. Galzitskaya, Alexey K. Surin, Roman A. Zubarev

Journal:

Angewandte Chemie

Year:

2007

Language:

english

File:

PDF, 101 KB

english, 2007

12

Backbone Carbonyl Group Basicities Are Related to Gas-Phase Fragmentation of Peptides and Protein Folding

Mikhail M. Savitski, Frank Kjeldsen, Michael L. Nielsen, Sergiy O. Garbuzynskiy, Oxana V. Galzitskaya, Alexey K. Surin, Roman A. Zubarev

Journal:

Angewandte Chemie International Edition

Year:

2007

Language:

english

File:

PDF, 102 KB

english, 2007

13

β-Hairpins, α-helices, and the intermediates among the secondary structures in the energy landscape of a peptide from a distal β-hairpin of SH3 domain

Kazuyoshi Ikeda, Oxana V. Galzitskaya, Haruki Nakamura, Junichi Higo

Journal:

Journal of Computational Chemistry

Year:

2003

Language:

english

File:

PDF, 1.08 MB

english, 2003

14

Physics of protein folding

A.V. Finkelstein, O.V. Galzitskaya

Journal:

Physics of Life Reviews

Year:

2004

Language:

english

File:

PDF, 732 KB

english, 2004

15

Energy landscape of a β-hairpin peptide in explicit water studied by multicanonical molecular dynamics

Jucichi Higo, Oxana V. Galzitskaya, Satoshi Ono, Haruki Nakamura

Journal:

Chemical Physics Letters

Year:

2001

Language:

english

File:

PDF, 421 KB

english, 2001

16

Solution conformation of phakellistatin 8 investigated by molecular dynamics simulations

Oxana Galzitskaya, Amedeo Caflisch

Journal:

Journal of Molecular Graphics and Modelling

Year:

1999

Language:

english

File:

PDF, 465 KB

english, 1999

17

Chain length is the main determinant of the folding rate for proteins with three-state folding kinetics

Oxana V. Galzitskaya, Sergiy O. Garbuzynskiy, Dmitry N. Ivankov, Alexei V. Finkelstein

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2003

Language:

english

File:

PDF, 98 KB

english, 2003

18

Comparison of X-ray and NMR structures: Is there a systematic difference in residue contacts between X-ray- and NMR-resolved protein structures?

Sergiy O. Garbuzynskiy, Bogdan S. Melnik, Michail Yu. Lobanov, Alexei V. Finkelstein, Oxana V. Galzitskaya

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2005

Language:

english

File:

PDF, 393 KB

english, 2005

19

Entropy capacity determines protein folding

Oxana V. Galzitskaya, Sergiy O. Garbuzynskiy

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2006

Language:

english

File:

PDF, 732 KB

english, 2006

20

More compact protein globules exhibit slower folding rates

Oxana V. Galzitskaya, Danielle C. Reifsnyder, Natalya S. Bogatyreva, Dmitry N. Ivankov, Sergiy O. Garbuzynskiy

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2008

Language:

english

File:

PDF, 221 KB

english, 2008

21

The difference between protein structures obtained by x-ray analysis and nuclear magnetic resonance

B. S. Melnik, S. O. Garbuzynskiy, M. Yu. Lobanov, O. V. Galzitskaya

Journal:

Molecular Biology

Year:

2005

Language:

english

File:

PDF, 150 KB

english, 2005

22

On the Prediction of Folding Nuclei in Globular Proteins

S. O. Garbuzynskiy, A. V. Finkelstein, O. V. Galzitskaya

Journal:

Molecular Biology

Year:

2005

Language:

english

File:

PDF, 117 KB

english, 2005

23

β-hairpin folds by molecular dynamics simulations

Oxana V. Galzitskaya, Junichi Higo, Masataka Kuroda, Haruki Nakamura

Journal:

Chemical Physics Letters

Year:

2000

Language:

english

File:

PDF, 466 KB

english, 2000

24

Are the same or different amino acid residues responsible for correct and incorrect protein folding?

O. V. Galzitskaya

Journal:

Biochemistry (Moscow)

Year:

2009

Language:

english

File:

PDF, 164 KB

english, 2009

25

Comparison of transition states obtained upon modeling of unfolding of immunoglobulin-binding domains of proteins L and G caused by external action with transition states obtained in the absence of force probed by experiments

A. V. Glyakina, N. K. Balabaev, O. V. Galzitskaya

Journal:

Biochemistry (Moscow)

Year:

2009

Language:

english

File:

PDF, 434 KB

english, 2009

26

Prediction of amino acid residues protected from hydrogen-deuterium exchange in a protein chain

N. V. Dovidchenko, M. Yu. Lobanov, S. O. Garbuzynskiy, O. V. Galzitskaya

Journal:

Biochemistry (Moscow)

Year:

2009

Language:

english

File:

PDF, 212 KB

english, 2009

27

Statistical analysis of unstructured amino acid residues in protein structures

M. Yu. Lobanov, S. O. Garbuzynskiy, O. V. Galzitskaya

Journal:

Biochemistry (Moscow)

Year:

2010

Language:

english

File:

PDF, 251 KB

english, 2010

28

Is protein folding rate dependent on number of folding stages? Modeling of protein folding with ferredoxin-like fold

O. V. Galzitskaya

Journal:

Biochemistry (Moscow)

Year:

2010

Language:

english

File:

PDF, 452 KB

english, 2010

29

Influence of organization of native protein structure on its folding: Modeling of the folding of α-helical proteins

A. V. Glyakina, O. V. Galzitskaya

Journal:

Biochemistry (Moscow)

Year:

2010

Language:

english

File:

PDF, 536 KB

english, 2010

30

Modeling amyloid fibril formation

N. V. Dovidchenko, O. V. Galzitskaya

Journal:

Biochemistry (Moscow)

Year:

2011

Language:

english

File:

PDF, 213 KB

english, 2011

31

Prediction of folding nuclei in tRNA molecules

L. B. Pereyaslavets, M. V. Baranov, E. I. Leonova, O. V. Galzitskaya

Journal:

Biochemistry (Moscow)

Year:

2011

Language:

english

File:

PDF, 440 KB

english, 2011

32

Bacterial proteins fold faster than eukaryotic proteins with simple folding kinetics

O. V. Galzitskaya, N. S. Bogatyreva, A. V. Glyakina

Journal:

Biochemistry (Moscow)

Year:

2011

Language:

english

File:

PDF, 404 KB

english, 2011

33

Optimal ratio between the average conformational entropy and the average energy of interaction between residues for fast protein folding

O. V. Galzitskaya, S. A. Garbuzinskii

Journal:

Year:

2006

Language:

english

File:

PDF, 209 KB

english, 2006

34

Prediction of protein domain boundaries from statistics of appearance of amino acid residues

O. V. Galzitskaya, N. V. Dovidchenko, M. Yu. Lobanov, S. O. Garbuzynskiy

Journal:

Molecular Biology

Year:

2006

Language:

english

File:

PDF, 217 KB

english, 2006

35

Prediction of natively unfolded regions in protein chains

O. V. Galzitskaya, S. O. Garbuzynskiy, M. Yu. Lobanov

Journal:

Molecular Biology

Year:

2006

Language:

english

File:

PDF, 147 KB

english, 2006

36

Identification of β-aggregate sites in protein chains

O. V. Galzitskaya

Journal:

Molecular Biology

Year:

2006

Language:

english

File:

PDF, 154 KB

english, 2006

37

A search for amyloidogenic regions in protein chains

O. V. Galzitskaya, S. O. Garbuzynskiy, M. Yu. Lobanov

Journal:

Molecular Biology

Year:

2006

Language:

english

File:

PDF, 165 KB

english, 2006

38

A search for structural factors responsible for the stability of proteins from thermophilic organisms

A. V. Glyakina, M. Yu. Lobanov, O. V. Galzitskaya

Journal:

Molecular Biology

Year:

2007

Language:

english

File:

PDF, 200 KB

english, 2007

39

Disordered regions in elongation factors EF1A in the three superkingdoms of life

I. N. Serdyuk, O. V. Galzitskaya

Journal:

Molecular Biology

Year:

2007

Language:

english

File:

PDF, 233 KB

english, 2007

40

Prediction of short loops in intrinsically disordered proteins

E. I. Deryusheva, O. V. Galzitskaya, I. N. Serdyuk

Journal:

Molecular Biology

Year:

2008

Language:

english

File:

PDF, 482 KB

english, 2008

41

Formation and participation of nano-amyloids in pathogenesis of Alzheimer’s disease and other amyloidogenic diseases

A. V. Maltsev, O. V. Galzitskaya

Journal:

Biochemistry (Moscow) Supplemental Series B: Biomedical Chemistry

Year:

2010

Language:

english

File:

PDF, 154 KB

english, 2010

42

Folding Nuclei in Proteins

O. V. Galzitskaya, D. N. Ivankov, A. V. Finkelstein

Journal:

Molecular Biology

Year:

2001

Language:

english

File:

PDF, 112 KB

english, 2001

43

Sensitivity of the Folding Pathway to the Details of Amino Acid Sequence

O. V. Galzitskaya

Journal:

Molecular Biology

Year:

2002

Language:

english

File:

PDF, 107 KB

english, 2002

44

Folding of β-Hairpins

O. V. Galzitskaya

Journal:

Molecular Biology

Year:

2002

Language:

english

File:

PDF, 39 KB

english, 2002

45

Mechanical unfolding of proteins L and G with constant force: Similarities and differences

Glyakina, A. V., Balabaev, N. K., Galzitskaya, O. V.

Journal:

The Journal of Chemical Physics

Year:

2009

Language:

english

File:

PDF, 829 KB

english, 2009

46

To be folded or to be unfolded?

Sergiy O. Garbuzynskiy, Michail Yu. Lobanov, Oxana V. Galzitskaya

Journal:

Protein Science

Year:

2004

Language:

english

File:

PDF, 254 KB

english, 2004

47

Optimal region of average side-chain entropy for fast protein folding

Oxana V. Galzitskaya, Alexei K. Surin, Haruki Nakamura

Journal:

Protein Science

Year:

2000

Language:

english

File:

PDF, 240 KB

english, 2000

48

Geometrical factor and physical reasons for its influence on the kinetic and thermodynamic properties of RNA-like heteropolymers

Oxana V Galzitskaya

Journal:

Folding and Design

Year:

1997

Language:

english

File:

PDF, 143 KB

english, 1997

49

Folding rate dependence on the chain length for RNA-like heteropolymers

Oxana V Galzitskaya, Alexei V Finkelstein

Journal:

Folding and Design

Year:

1998

Language:

english

File:

PDF, 163 KB

english, 1998

50

Formation of RNA spatial structures

E. I. Leonova, M. V. Baranov, O. V. Galzitskaya

Journal:

Molecular Biology

Year:

2012

Language:

english

File:

PDF, 414 KB

english, 2012

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